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DATE 2019-07-01

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MESSAGE
DATE 2019-07-12
FROM From: "Pat Schloss"
SUBJECT Subject: [Hangout - NYLXS] [mothur] August R workshop for microbial
From hangout-bounces-at-nylxs.com Mon Jul 15 01:59:37 2019
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From: "Pat Schloss"
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Subject: [Hangout - NYLXS] [mothur] August R workshop for microbial
ecologists
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I hope you are having an excellent summer!

I suspect you may be off doing field work, generating tons of awesome data=
for your project, or thinking about how you will package it together to te=
ll a compelling story. You might also be thinking about learning R to impro=
ve the reproducibility and rigor of your analyses and will help you to make=
attractive data visualizations. Sure, tools like mothur will help you proc=
ess raw sequencing data, but they can only get you so far until you need so=
mething customized for your biological questions. This is where many have f=
ound R to be enormously helpful. Further, if you aren=E2=80=99t even thinki=
ng about sequence data, R will help you analyze any data you have and will =
serve you as you continue in your career.=20

I will be teaching a 3 day R workshop from August 28-30 near the Detroit a=
irport. The workshop is being filled on a first come, first served basis. T=
he workshop is geared towards people with interests in microbial ecology th=
at would like to learn R or to learn it better. So you shouldn't feel like =
this isn't for you if you are a beginner. I assume no previous computer pro=
gramming experience. The workshop is an even blend of lecture/discussion an=
d hands on use of R with real data and typically uses mothur output files a=
s a starting point. Here is a rough outline of the content that past worksh=
ops have covered. We will make extensive use of packages from within the ti=
dyverse like ggplot2 and dplyr:

Ordination
Stripcharts and box and whisker plots
Line plots
Barcharts
Subsetting data
Reading and writing data
Basic parametric and non-parametric analyses

Each day there will be a lecture and discussion interspersed with hands-on=
activities. The session will run from 9 to 5 with a lunch break in the mi=
ddle. Unfortunately, the internet connection in the room is not strong enou=
gh to facilitate remote learners.=20

Please let me know if you would like additional details about costs, hotel=
reservations, and registration.

Pat




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=
=3Dutf-8">space; line-break: after-white-space;" class=3D"">
e=3D"Menlo-Regular" class=3D"">=
I hope you are having an excellent summer!
""> class=3D"">
=3D"Menlo-Regular" class=3D"">=
I suspect you may be off doing field work, generating tons of awesome data =
for your project, or thinking about how you will package it together to tel=
l a compelling story. You might also be thinking about learning R to improv=
e the reproducibility and rigor of your analyses and will help yo=
u to make attractive data visualizations. Sure, tools like mothur will help=
you process raw sequencing data, but they can only get you so far until yo=
u need something customized for your biological questions. This is where ma=
ny have found R to be enormously helpful. Further, if you aren=E2=80=99t ev=
en thinking about sequence data, R will help you analyze any data you have =
and will serve you as you continue in your career. 
>iv class=3D"">
I will be teaching a 3 d=
ay R workshop from August 28-30 near the Detroit airport. The workshop is b=
eing filled on a first come, first served basis. The workshop is geared tow=
ards people with interests in microbial ecology that would like to learn R =
or to learn it better. So you shouldn't feel like this isn't for you if you=
are a beginner. I assume no previous computer programming experience. The =
workshop is an even blend of lecture/discussion and hands on use of R with =
real data and typically uses mothur output files as a starting point. Here =
is a rough outline of the content that past workshops have covered. We will=
make extensive use of packages from within the tidyverse like ggplot2 and =
dplyr:

;" class=3D"">gular; font-size: 11px; white-space: pre;"> ly: Menlo-Regular; font-size: 11px;" class=3D"">Ordination
=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">=3D"Apple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; =
white-space: pre;">
size: 11px;" class=3D"">Stripcharts and box and whisker plots
le=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">=3D"Apple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; =
white-space: pre;">
size: 11px;" class=3D"">Line plots
gular; font-size: 11px;" class=3D"">"font-family: Menlo-Regular; font-size: 11px; white-space: pre;"> pan style=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">Barch=
arts
=
=3D"">font-size: 11px; white-space: pre;"> lo-Regular; font-size: 11px;" class=3D"">Subsetting data
"font-family: Menlo-Regular; font-size: 11px;" class=3D"">ple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; white-s=
pace: pre;">
1px;" class=3D"">Reading and writing data
enlo-Regular; font-size: 11px;" class=3D"">tyle=3D"font-family: Menlo-Regular; font-size: 11px; white-space: pre;"> span>">Basic parametric and non-parametric analyses
ly: Menlo-Regular; font-size: 11px;" class=3D"">
enlo-Regular; font-size: 11px;" class=3D"">ss=3D"">Each day there will be =
a lecture and discussion interspersed with hands-on activities.  The s=
ession will run from 9 to 5 with a lunch break in the middle. Unfortunately=
, the internet connection in the room is not strong enough to facilita=
te remote learners. 
enlo-Regular" class=3D"">
ass=3D"">
lass=3D"">Please let me know if=
you would like additional details about costs, hotel reservations, and reg=
istration.
class=3D"">
n>
n style=3D"font-size: 11px;" class=3D"">Pat
v class=3D"">
ss=3D"">
"">
div>

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