Tue Apr 23 08:32:19 2024
EVENTS
 FREE
SOFTWARE
INSTITUTE

POLITICS
JOBS
MEMBERS'
CORNER

MAILING
LIST

NYLXS Mailing Lists and Archives
NYLXS Members have a lot to say and share but we don't keep many secrets. Join the Hangout Mailing List and say your peice.

DATE 2021-08-01

LEARN

2024-04-23 | 2024-03-23 | 2024-02-23 | 2024-01-23 | 2023-12-23 | 2023-11-23 | 2023-10-23 | 2023-09-23 | 2023-08-23 | 2023-07-23 | 2023-06-23 | 2023-05-23 | 2023-04-23 | 2023-03-23 | 2023-02-23 | 2023-01-23 | 2022-12-23 | 2022-11-23 | 2022-10-23 | 2022-09-23 | 2022-08-23 | 2022-07-23 | 2022-06-23 | 2022-05-23 | 2022-04-23 | 2022-03-23 | 2022-02-23 | 2022-01-23 | 2021-12-23 | 2021-11-23 | 2021-10-23 | 2021-09-23 | 2021-08-23 | 2021-07-23 | 2021-06-23 | 2021-05-23 | 2021-04-23 | 2021-03-23 | 2021-02-23 | 2021-01-23 | 2020-12-23 | 2020-11-23 | 2020-10-23 | 2020-09-23 | 2020-08-23 | 2020-07-23 | 2020-06-23 | 2020-05-23 | 2020-04-23 | 2020-03-23 | 2020-02-23 | 2020-01-23 | 2019-12-23 | 2019-11-23 | 2019-10-23 | 2019-09-23 | 2019-08-23 | 2019-07-23 | 2019-06-23 | 2019-05-23 | 2019-04-23 | 2019-03-23 | 2019-02-23 | 2019-01-23 | 2018-12-23 | 2018-11-23 | 2018-10-23 | 2018-09-23 | 2018-08-23 | 2018-07-23 | 2018-06-23 | 2018-05-23 | 2018-04-23 | 2018-03-23 | 2018-02-23 | 2018-01-23 | 2017-12-23 | 2017-11-23 | 2017-10-23 | 2017-09-23 | 2017-08-23 | 2017-07-23 | 2017-06-23 | 2017-05-23 | 2017-04-23 | 2017-03-23 | 2017-02-23 | 2017-01-23 | 2016-12-23 | 2016-11-23 | 2016-10-23 | 2016-09-23 | 2016-08-23 | 2016-07-23 | 2016-06-23 | 2016-05-23 | 2016-04-23 | 2016-03-23 | 2016-02-23 | 2016-01-23 | 2015-12-23 | 2015-11-23 | 2015-10-23 | 2015-09-23 | 2015-08-23 | 2015-07-23 | 2015-06-23 | 2015-05-23 | 2015-04-23 | 2015-03-23 | 2015-02-23 | 2015-01-23 | 2014-12-23 | 2014-11-23 | 2014-10-23

Key: Value:

Key: Value:

MESSAGE
DATE 2021-08-26
FROM From: "Pat Schloss"
SUBJECT Subject: [Learn] [mothur] mothur v.1.46.0 release and other happenings
From learn-bounces-at-nylxs.com Thu Aug 26 20:54:48 2021
Return-Path:
X-Original-To: archive-at-mrbrklyn.com
Delivered-To: archive-at-mrbrklyn.com
Received: from www2.mrbrklyn.com (www2.mrbrklyn.com [96.57.23.82])
by mrbrklyn.com (Postfix) with ESMTP id 388E1163FB3;
Thu, 26 Aug 2021 20:54:48 -0400 (EDT)
X-Original-To: learn-at-www2.mrbrklyn.com
Delivered-To: learn-at-www2.mrbrklyn.com
Received: by mrbrklyn.com (Postfix, from userid 1000)
id 39FC6163FB3; Thu, 26 Aug 2021 20:54:37 -0400 (EDT)
Resent-From: Ruben Safir
Resent-Date: Thu, 26 Aug 2021 20:54:37 -0400
Resent-Message-ID: <20210827005437.GB4117-at-www2.mrbrklyn.com>
Resent-To: learn-at-mrbrklyn.com
X-Original-To: ruben-at-mrbrklyn.com
Delivered-To: ruben-at-mrbrklyn.com
Received: from web01.groups.io (web01.groups.io [66.175.222.12])
by mrbrklyn.com (Postfix) with ESMTP id 2122A163F96
for ; Thu, 26 Aug 2021 17:11:35 -0400 (EDT)
X-Received: by 127.0.0.2 with SMTP id xsrVYY322857xs6M30x1RGm;
Thu, 26 Aug 2021 14:11:35 -0700
X-Received: from mail-qk1-f182.google.com (mail-qk1-f182.google.com
[209.85.222.182])
by mx.groups.io with SMTP id smtpd.web10.35.1630012292688902386
for ; Thu, 26 Aug 2021 14:11:33 -0700
X-Received: by mail-qk1-f182.google.com with SMTP id t190so5000046qke.7
for ; Thu, 26 Aug 2021 14:11:32 -0700 (PDT)
X-Gm-Message-State: GUBTfdwpSDrdweXgXxf6q34Vx321522AA=
X-Google-Smtp-Source: ABdhPJz6AcnMXzAZtCiDehj7SMmu7i5YCPq9k2GPFSjOa5n9I1TvyigXynuJS6f4AfUAGVbZFUYO5fT9Dd6dRSPOes0=
X-Received: by 2002:a37:8044:: with SMTP id b65mr5780543qkd.295.1630012291395;
Thu, 26 Aug 2021 14:11:31 -0700 (PDT)
MIME-Version: 1.0
From: "Pat Schloss"
Date: Thu, 26 Aug 2021 17:11:20 -0400
Message-ID:
To: mothur-at-groups.io
Precedence: Bulk
Mailing-List: list mothur-at-groups.io; contact mothur+owner-at-groups.io
Delivered-To: mailing list mothur-at-groups.io
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=groups.io;
q=dns/txt; s=20140610; t=1630012295;
bh=Au4/XLuzSKcazW4K3qsm20msXis5fikK7zptZWqTcAI=;
h=Content-Type:Date:From:Reply-To:Subject:To;
b=Er2MchHHfukDNRy9JrKLjL+bmX558XVXgv3xOhTf5wg/iUtAc3DycshPG+1B8DyiVJ/
oSuuSXS+K8AFlXMfMSD72j145TjAH0HeYGfrwgLeYlG2T/T1NcGIkcxZk+vPsJfv0vEG5
kVYTYXiFkgyWXUlk9zxN/eYUvhpVSFjv1m0=
Subject: [Learn] [mothur] mothur v.1.46.0 release and other happenings
X-BeenThere: learn-at-nylxs.com
X-Mailman-Version: 2.1.30rc1
List-Id:
List-Unsubscribe: ,

List-Archive:
List-Post:
List-Help:
List-Subscribe: ,

Reply-To: mothur-at-groups.io
Content-Type: multipart/mixed; boundary="===============0058492390=="
Errors-To: learn-bounces-at-nylxs.com
Sender: "Learn"

--===============0058492390==
Content-Type: multipart/alternative; boundary="0000000000009bcb4305ca7ccfbb"

--0000000000009bcb4305ca7ccfbb
Content-Type: text/plain; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

Hello mothur users!

We are happy to announce the release of mothur v.1.46.0
. Over the past few
months we=E2=80=99ve incorporated a number of little tweaks to mothur to ma=
ke it
run better by resolving some bugs and improving the overall usability.
We're particularly excited about two additions we've made that will
hopefully help address some long standing problems people have had with
analyzing ITS sequences and amino acid sequences. First, we have refactored
pairwise.seqs to use a heuristic to
reduce the number of distances that need to be calculated. The result is a
>99% decrease in execution time. Second, we have added several new distance
calculation methods to dist.seqs so
that you can now calculate pairwise distances between amino acid sequences.
Look for more functions in future releases for both ITS and amino acid
sequences! Please let us know what you think of these functions and what
other functionalities you'd like to see to make your ITS/amino acid
sequence workflows easier.

There's a couple of other items to let you know about to help you as you
navigate your way through learning more about data analysis. First, my
schedule for virtual workshops is up on
the Riffomonas website with a mothur workshop scheduled for September.
Second, I continue to post regular videos to the Riffomonas YouTube channel
. Finally, if you're looking
for more updates on Riffomonas and resources for strengthening your R
skills, I have a free weekly newsletter
that you can subscribe to. I've been encouraged by the positive feedback
I've received from the content on Riffomonas - let me know if there's
anything you'd like me to be sure to cover.

Enjoy the new release and stay safe!
Pat


-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-
Groups.io Links: You receive all messages sent to this group.
View/Reply Online (#35): https://groups.io/g/mothur/message/35
Mute This Topic: https://groups.io/mt/85172067/321522
Group Owner: mothur+owner-at-groups.io
Unsubscribe: https://groups.io/g/mothur/leave/10134514/321522/2086763283/xy=
zzy [ruben-at-mrbrklyn.com]
-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-



--0000000000009bcb4305ca7ccfbb
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

Hello mothur users!

We are happy to announce the re=
lease of mothu=
r v.1.46.0
. Over the past few months we=E2=80=99ve incorporated a numbe=
r of little tweaks to mothur to make it run better by resolving some bugs a=
nd improving the overall usability. We're particularly excited about tw=
o additions we've made that will hopefully help address some long stand=
ing problems people have had with analyzing ITS sequences and amino acid se=
quences. First, we have refactored se.seqs/">pairwise.seqs to use a heuristic to reduce the number of dist=
ances that need to be calculated. The result is a >99% decrease in execu=
tion time. Second, we have added several new distance calculation methods t=
o dist.seqs so that you c=
an now calculate pairwise distances between amino acid sequences. Look for =
more functions in future releases for both ITS and amino acid sequences! Pl=
ease let us know what you think of these functions and what other functiona=
lities you'd like to see to make your ITS/amino acid sequence workflows=
easier.

There's a couple of other items to let you know about t=
o help you as you navigate your way through learning more about data analys=
is. First, my schedule for vi=
rtual workshops
is up on the Riffomonas website with a mothur workshop =
scheduled for September. Second, I continue to post regular videos to the <=
a href=3D"https://www.youtube.com/c/RiffomonasProject">Riffomonas YouTube c=
hannel. Finally, if you're looking for more updates on Riffomonas a=
nd resources for strengthening your R skills, I have a hop.riffomonas.org/email">free weekly newsletter that you can subscribe=
to. I've been encouraged by the positive feedback I've received fr=
om the content on Riffomonas - let me know if there's anything you'=
d like me to be sure to cover.

Enjoy the new release and stay safe!<=
br>Pat



_._,_._,_

G=
roups.io Links:

You receive all messages sent to this group.

target=3D"_blank" href=3D"https://groups.io/g/mothur/message/35">View/Repl=
y Online (#35) | subject=3DRe:%20%5Bmothur%5D%20mothur%20v.1.46.0%20release%20and%20other%20=
happenings">Reply To Group
| oss-at-umich.edu?subject=3DPrivate:%20Re:%20%5Bmothur%5D%20mothur%20v.1.46.0%2=
0release%20and%20other%20happenings">Reply To Sender
| _blank" href=3D"https://groups.io/mt/85172067/321522">Mute This Topic =
| New Topic
=3D"https://groups.io/g/mothur/editsub/321522">Your Subscription | ref=3D"mailto:mothur+owner-at-groups.io">Contact Group Owner | "https://groups.io/g/mothur/leave/10134514/321522/2086763283/xyzzy">Unsubsc=
ribe
[ruben-at-mrbrklyn.com]

ear:both">_._,_._,_
=20


--0000000000009bcb4305ca7ccfbb--

--===============0058492390==
Content-Type: text/plain; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
Content-Disposition: inline

_______________________________________________
Learn mailing list
Learn-at-nylxs.com
http://lists.mrbrklyn.com/mailman/listinfo/learn

--===============0058492390==--

  1. 2021-08-26 From: "Pat Schloss" <pschloss-at-umich.edu> Subject: [Learn] [mothur] mothur v.1.46.0 release and other happenings
  2. 2021-08-30 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] [Hangout - NYLXS] Really we are reaching the end of
  3. 2021-08-30 Lee Shallis <gb2985-at-gmail.com> Subject: [Learn] [png-mng-implement] Own implementation loader/renderer

NYLXS are Do'ers and the first step of Doing is Joining! Join NYLXS and make a difference in your community today!