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DATE 2021-08-01

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MESSAGE
DATE 2021-08-26
FROM From: "Pat Schloss"
SUBJECT Subject: [Hangout - NYLXS] [mothur] mothur v.1.46.0 release and other
From hangout-bounces-at-nylxs.com Thu Aug 26 20:54:41 2021
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From: "Pat Schloss"
Date: Thu, 26 Aug 2021 17:11:20 -0400
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Subject: [Hangout - NYLXS] [mothur] mothur v.1.46.0 release and other
happenings
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Hello mothur users!

We are happy to announce the release of mothur v.1.46.0
. Over the past few
months we=E2=80=99ve incorporated a number of little tweaks to mothur to ma=
ke it
run better by resolving some bugs and improving the overall usability.
We're particularly excited about two additions we've made that will
hopefully help address some long standing problems people have had with
analyzing ITS sequences and amino acid sequences. First, we have refactored
pairwise.seqs to use a heuristic to
reduce the number of distances that need to be calculated. The result is a
>99% decrease in execution time. Second, we have added several new distance
calculation methods to dist.seqs so
that you can now calculate pairwise distances between amino acid sequences.
Look for more functions in future releases for both ITS and amino acid
sequences! Please let us know what you think of these functions and what
other functionalities you'd like to see to make your ITS/amino acid
sequence workflows easier.

There's a couple of other items to let you know about to help you as you
navigate your way through learning more about data analysis. First, my
schedule for virtual workshops is up on
the Riffomonas website with a mothur workshop scheduled for September.
Second, I continue to post regular videos to the Riffomonas YouTube channel
. Finally, if you're looking
for more updates on Riffomonas and resources for strengthening your R
skills, I have a free weekly newsletter
that you can subscribe to. I've been encouraged by the positive feedback
I've received from the content on Riffomonas - let me know if there's
anything you'd like me to be sure to cover.

Enjoy the new release and stay safe!
Pat


-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-
Groups.io Links: You receive all messages sent to this group.
View/Reply Online (#35): https://groups.io/g/mothur/message/35
Mute This Topic: https://groups.io/mt/85172067/321522
Group Owner: mothur+owner-at-groups.io
Unsubscribe: https://groups.io/g/mothur/leave/10134514/321522/2086763283/xy=
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--0000000000009bcb4305ca7ccfbb
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

Hello mothur users!

We are happy to announce the re=
lease of mothu=
r v.1.46.0
. Over the past few months we=E2=80=99ve incorporated a numbe=
r of little tweaks to mothur to make it run better by resolving some bugs a=
nd improving the overall usability. We're particularly excited about tw=
o additions we've made that will hopefully help address some long stand=
ing problems people have had with analyzing ITS sequences and amino acid se=
quences. First, we have refactored se.seqs/">pairwise.seqs to use a heuristic to reduce the number of dist=
ances that need to be calculated. The result is a >99% decrease in execu=
tion time. Second, we have added several new distance calculation methods t=
o dist.seqs so that you c=
an now calculate pairwise distances between amino acid sequences. Look for =
more functions in future releases for both ITS and amino acid sequences! Pl=
ease let us know what you think of these functions and what other functiona=
lities you'd like to see to make your ITS/amino acid sequence workflows=
easier.

There's a couple of other items to let you know about t=
o help you as you navigate your way through learning more about data analys=
is. First, my schedule for vi=
rtual workshops
is up on the Riffomonas website with a mothur workshop =
scheduled for September. Second, I continue to post regular videos to the <=
a href=3D"https://www.youtube.com/c/RiffomonasProject">Riffomonas YouTube c=
hannel. Finally, if you're looking for more updates on Riffomonas a=
nd resources for strengthening your R skills, I have a hop.riffomonas.org/email">free weekly newsletter that you can subscribe=
to. I've been encouraged by the positive feedback I've received fr=
om the content on Riffomonas - let me know if there's anything you'=
d like me to be sure to cover.

Enjoy the new release and stay safe!<=
br>Pat



_._,_._,_

G=
roups.io Links:

You receive all messages sent to this group.

target=3D"_blank" href=3D"https://groups.io/g/mothur/message/35">View/Repl=
y Online (#35) | subject=3DRe:%20%5Bmothur%5D%20mothur%20v.1.46.0%20release%20and%20other%20=
happenings">Reply To Group
| oss-at-umich.edu?subject=3DPrivate:%20Re:%20%5Bmothur%5D%20mothur%20v.1.46.0%2=
0release%20and%20other%20happenings">Reply To Sender
| _blank" href=3D"https://groups.io/mt/85172067/321522">Mute This Topic =
| New Topic
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ribe
[ruben-at-mrbrklyn.com]

ear:both">_._,_._,_
=20


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_______________________________________________
Hangout mailing list
Hangout-at-nylxs.com
http://lists.mrbrklyn.com/mailman/listinfo/hangout

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--0000000000009bcb4305ca7ccfbb
Content-Type: text/plain; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

Hello mothur users!

We are happy to announce the release of mothur v.1.46.0
. Over the past few
months we=E2=80=99ve incorporated a number of little tweaks to mothur to ma=
ke it
run better by resolving some bugs and improving the overall usability.
We're particularly excited about two additions we've made that will
hopefully help address some long standing problems people have had with
analyzing ITS sequences and amino acid sequences. First, we have refactored
pairwise.seqs to use a heuristic to
reduce the number of distances that need to be calculated. The result is a
>99% decrease in execution time. Second, we have added several new distance
calculation methods to dist.seqs so
that you can now calculate pairwise distances between amino acid sequences.
Look for more functions in future releases for both ITS and amino acid
sequences! Please let us know what you think of these functions and what
other functionalities you'd like to see to make your ITS/amino acid
sequence workflows easier.

There's a couple of other items to let you know about to help you as you
navigate your way through learning more about data analysis. First, my
schedule for virtual workshops is up on
the Riffomonas website with a mothur workshop scheduled for September.
Second, I continue to post regular videos to the Riffomonas YouTube channel
. Finally, if you're looking
for more updates on Riffomonas and resources for strengthening your R
skills, I have a free weekly newsletter
that you can subscribe to. I've been encouraged by the positive feedback
I've received from the content on Riffomonas - let me know if there's
anything you'd like me to be sure to cover.

Enjoy the new release and stay safe!
Pat


-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-
Groups.io Links: You receive all messages sent to this group.
View/Reply Online (#35): https://groups.io/g/mothur/message/35
Mute This Topic: https://groups.io/mt/85172067/321522
Group Owner: mothur+owner-at-groups.io
Unsubscribe: https://groups.io/g/mothur/leave/10134514/321522/2086763283/xy=
zzy [ruben-at-mrbrklyn.com]
-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-



--0000000000009bcb4305ca7ccfbb
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

Hello mothur users!

We are happy to announce the re=
lease of mothu=
r v.1.46.0
. Over the past few months we=E2=80=99ve incorporated a numbe=
r of little tweaks to mothur to make it run better by resolving some bugs a=
nd improving the overall usability. We're particularly excited about tw=
o additions we've made that will hopefully help address some long stand=
ing problems people have had with analyzing ITS sequences and amino acid se=
quences. First, we have refactored se.seqs/">pairwise.seqs to use a heuristic to reduce the number of dist=
ances that need to be calculated. The result is a >99% decrease in execu=
tion time. Second, we have added several new distance calculation methods t=
o dist.seqs so that you c=
an now calculate pairwise distances between amino acid sequences. Look for =
more functions in future releases for both ITS and amino acid sequences! Pl=
ease let us know what you think of these functions and what other functiona=
lities you'd like to see to make your ITS/amino acid sequence workflows=
easier.

There's a couple of other items to let you know about t=
o help you as you navigate your way through learning more about data analys=
is. First, my schedule for vi=
rtual workshops
is up on the Riffomonas website with a mothur workshop =
scheduled for September. Second, I continue to post regular videos to the <=
a href=3D"https://www.youtube.com/c/RiffomonasProject">Riffomonas YouTube c=
hannel. Finally, if you're looking for more updates on Riffomonas a=
nd resources for strengthening your R skills, I have a hop.riffomonas.org/email">free weekly newsletter that you can subscribe=
to. I've been encouraged by the positive feedback I've received fr=
om the content on Riffomonas - let me know if there's anything you'=
d like me to be sure to cover.

Enjoy the new release and stay safe!<=
br>Pat



_._,_._,_

G=
roups.io Links:

You receive all messages sent to this group.

target=3D"_blank" href=3D"https://groups.io/g/mothur/message/35">View/Repl=
y Online (#35) | subject=3DRe:%20%5Bmothur%5D%20mothur%20v.1.46.0%20release%20and%20other%20=
happenings">Reply To Group
| oss-at-umich.edu?subject=3DPrivate:%20Re:%20%5Bmothur%5D%20mothur%20v.1.46.0%2=
0release%20and%20other%20happenings">Reply To Sender
| _blank" href=3D"https://groups.io/mt/85172067/321522">Mute This Topic =
| New Topic
=3D"https://groups.io/g/mothur/editsub/321522">Your Subscription | ref=3D"mailto:mothur+owner-at-groups.io">Contact Group Owner | "https://groups.io/g/mothur/leave/10134514/321522/2086763283/xyzzy">Unsubsc=
ribe
[ruben-at-mrbrklyn.com]

ear:both">_._,_._,_
=20


--0000000000009bcb4305ca7ccfbb--

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_______________________________________________
Hangout mailing list
Hangout-at-nylxs.com
http://lists.mrbrklyn.com/mailman/listinfo/hangout

--===============0288292963==--

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  27. 2021-08-09 Javier <je-vv-at-e.email> Subject: [Hangout - NYLXS] [artix-general] [s6] starting oneshots as non root
  28. 2021-08-20 Qontinuum <qontinuum-at-artixlinux.org> Re: [Hangout - NYLXS] [artix-general] iptables blocking dns queries
  29. 2021-08-20 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Hangout - NYLXS] [artix-general] iptables blocking dns queries
  30. 2021-08-20 Qontinuum <qontinuum-at-artixlinux.org> Re: [Hangout - NYLXS] [artix-general] iptables blocking dns queries
  31. 2021-08-20 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Hangout - NYLXS] [artix-general] iptables blocking dns queries
  32. 2021-08-20 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] [artix-general] mirror dns issues with orion
  33. 2021-08-20 winfried szukalski <szukw000-at-arcor.de> Subject: [Hangout - NYLXS] [png-mng-implement] Reading single MNG image
  34. 2021-08-19 IEEE Engineering in Medicine and Biology Society <noreply-at-embs.org> Subject: [Hangout - NYLXS] IEEE EMBS Public Forum on Healthcare Tech
  35. 2021-08-20 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Hangout - NYLXS] [artix-general] iptables blocking dns queries
  36. 2021-08-20 From: "Donald Robertson, III, FSF" <info-at-fsf.org> Subject: [Hangout - NYLXS] Meeting every Friday: Help us update the Free
  37. 2021-08-21 Rick Moen <rick-at-linuxmafia.com> Re: [Hangout - NYLXS] [artix-general] iptables blocking dns queries
  38. 2021-08-21 Javier <je-vv-at-e.email> Subject: [Hangout - NYLXS] [artix-general] [thunderbird-artix] TB calendar
  39. 2021-08-23 G?bor Szab? <gabor-at-szabgab.com> Subject: [Hangout - NYLXS] [Perlweekly] #526 - Politics in Programming?
  40. 2021-08-22 artist <artist-at-artixlinux.org> Re: [Hangout - NYLXS] [artix-general] [thunderbird-artix] TB
  41. 2021-08-23 mayer ilovitz <pmamayeri-at-gmail.com> Subject: [Hangout - NYLXS] JP 8/20/21: Yes,
  42. 2021-08-23 G?bor Szab? <gabor-at-szabgab.com> Subject: [Hangout - NYLXS] [Perlweekly] #526 - Politics in Programming?
  43. 2021-08-23 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] genes Genes Jeans
  44. 2021-08-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] [artix-general] squashed initramfs.img
  45. 2021-08-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Actually - it is a bug with xfs root file systems
  46. 2021-08-25 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Hangout - NYLXS] [artix-general] Actually - it is a bug with
  47. 2021-08-26 From: "Pat Schloss" <pschloss-at-umich.edu> Subject: [Hangout - NYLXS] [mothur] mothur v.1.46.0 release and other
  48. 2021-08-27 Kevin Cole <dc.loco-at-gmail.com> Subject: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  49. 2021-08-27 Kevin Cole <dc.loco-at-gmail.com> Subject: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  50. 2021-08-27 Kevin Cole <dc.loco-at-gmail.com> Subject: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  51. 2021-08-28 Luis Falcon <falcon-at-gnuhealth.org> Re: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  52. 2021-08-27 Kevin Cole <dc.loco-at-gmail.com> Re: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  53. 2021-08-27 Kevin Cole <dc.loco-at-gmail.com> Re: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  54. 2021-08-27 Luis Falcon <falcon-at-gnuhealth.org> Re: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  55. 2021-08-27 Kevin Cole <dc.loco-at-gmail.com> Subject: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  56. 2021-08-30 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Future of Fashion - today..
  57. 2021-08-30 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Really we are reaching the end of humanity...
  58. 2021-08-30 Lee Shallis <gb2985-at-gmail.com> Subject: [Hangout - NYLXS] [png-mng-implement] Own implementation
  59. 2021-08-29 Luis Falcon <falcon-at-gnuhealth.org> Re: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  60. 2021-08-28 Kevin Cole <dc.loco-at-gmail.com> Re: [Hangout - NYLXS] [Health] My GNU Health merely crashes...
  61. 2021-08-31 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Fwd: Control your computer with code,
  62. 2021-08-30 From: "Free Software Foundation" <info-at-fsf.org> Subject: [Hangout - NYLXS] FSF copyright handling: A basis for distribution,
  63. 2021-08-25 David Booth <david-at-dbooth.org> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads? [EXT]
  64. 2021-08-25 Jacques Deguest <jack-at-deguest.jp> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads?
  65. 2021-08-25 James Smith <js5-at-sanger.ac.uk> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads? [EXT]
  66. 2021-08-25 Brad Van Sickle <bvs7085-at-gmail.com> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads?
  67. 2021-08-24 David Booth <david-at-dbooth.org> Subject: [Hangout - NYLXS] Sharing read/WRITE data between threads?
  68. 2021-08-10 From: "Tammer, Rainer" <Rainer.Tammer-at-schulergroup.com> Re: [Hangout - NYLXS] Problem compiling mod_perl on AIX
  69. 2021-08-11 Steve Hay <steve.m.hay-at-googlemail.com> Re: [Hangout - NYLXS] Problem compiling mod_perl on AIX
  70. 2021-08-10 Steve Hay <steve.m.hay-at-googlemail.com> Re: [Hangout - NYLXS] Problem compiling mod_perl on AIX
  71. 2021-08-28 Alexandre Prokoudine via gimp-user-list <gimp-user-list-at-gnome.org> Re: [Hangout - NYLXS] [Gimp-user] screen interface too small to use
  72. 2021-08-28 Kerry Jones via gimp-user-list <gimp-user-list-at-gnome.org> Subject: [Hangout - NYLXS] [Gimp-user] screen interface too small to use
  73. 2021-08-25 Liam R E Quin <liam-at-holoweb.net> Re: [Hangout - NYLXS] [Gimp-user] language
  74. 2021-08-25 Fons de Wit <fons.de.wit-at-orange.fr> Subject: [Hangout - NYLXS] [Gimp-user] language
  75. 2021-08-25 James Smith <js5-at-sanger.ac.uk> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads? [EXT]
  76. 2021-08-25 David Booth <david-at-dbooth.org> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads? [EXT]
  77. 2021-08-25 Jacques Deguest <jack-at-deguest.jp> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads?
  78. 2021-08-25 Brad Van Sickle <bvs7085-at-gmail.com> Re: [Hangout - NYLXS] Sharing read/WRITE data between threads?
  79. 2021-08-24 David Booth <david-at-dbooth.org> Subject: [Hangout - NYLXS] Sharing read/WRITE data between threads?
  80. 2021-08-10 From: "Tammer, Rainer" <Rainer.Tammer-at-schulergroup.com> Re: [Hangout - NYLXS] Problem compiling mod_perl on AIX
  81. 2021-08-11 Steve Hay <steve.m.hay-at-googlemail.com> Re: [Hangout - NYLXS] Problem compiling mod_perl on AIX
  82. 2021-08-10 Steve Hay <steve.m.hay-at-googlemail.com> Re: [Hangout - NYLXS] Problem compiling mod_perl on AIX

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