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DATE 2021-08-01

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Key: Value:

MESSAGE

DATE	2021-08-26
FROM	From: "Pat Schloss"
SUBJECT	Subject: [Hangout - NYLXS] [mothur] mothur v.1.46.0 release and other
From hangout-bounces-at-nylxs.com Thu Aug 26 20:54:41 2021 Return-Path: X-Original-To: archive-at-mrbrklyn.com Delivered-To: archive-at-mrbrklyn.com Received: from www2.mrbrklyn.com (www2.mrbrklyn.com [96.57.23.82]) by mrbrklyn.com (Postfix) with ESMTP id C8F24163FAC; Thu, 26 Aug 2021 20:54:35 -0400 (EDT) X-Original-To: hangout-at-www2.mrbrklyn.com Delivered-To: hangout-at-www2.mrbrklyn.com Received: by mrbrklyn.com (Postfix, from userid 1000) id 2103A163FA8; Thu, 26 Aug 2021 20:54:30 -0400 (EDT) Resent-From: Ruben Safir Resent-Date: Thu, 26 Aug 2021 20:54:30 -0400 Resent-Message-ID: <20210827005430.GA4117-at-www2.mrbrklyn.com> Resent-To: hangout-at-mrbrklyn.com X-Original-To: ruben-at-mrbrklyn.com Delivered-To: ruben-at-mrbrklyn.com Received: from web01.groups.io (web01.groups.io [66.175.222.12]) by mrbrklyn.com (Postfix) with ESMTP id 2122A163F96 for ; Thu, 26 Aug 2021 17:11:35 -0400 (EDT) X-Received: by 127.0.0.2 with SMTP id xsrVYY322857xs6M30x1RGm; Thu, 26 Aug 2021 14:11:35 -0700 X-Received: from mail-qk1-f182.google.com (mail-qk1-f182.google.com [209.85.222.182]) by mx.groups.io with SMTP id smtpd.web10.35.1630012292688902386 for ; Thu, 26 Aug 2021 14:11:33 -0700 X-Received: by mail-qk1-f182.google.com with SMTP id t190so5000046qke.7 for ; Thu, 26 Aug 2021 14:11:32 -0700 (PDT) X-Gm-Message-State: GUBTfdwpSDrdweXgXxf6q34Vx321522AA= X-Google-Smtp-Source: ABdhPJz6AcnMXzAZtCiDehj7SMmu7i5YCPq9k2GPFSjOa5n9I1TvyigXynuJS6f4AfUAGVbZFUYO5fT9Dd6dRSPOes0= X-Received: by 2002:a37:8044:: with SMTP id b65mr5780543qkd.295.1630012291395; Thu, 26 Aug 2021 14:11:31 -0700 (PDT) MIME-Version: 1.0 From: "Pat Schloss" Date: Thu, 26 Aug 2021 17:11:20 -0400 Message-ID: To: mothur-at-groups.io Precedence: Bulk Mailing-List: list mothur-at-groups.io; contact mothur+owner-at-groups.io Delivered-To: mailing list mothur-at-groups.io DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=groups.io; q=dns/txt; s=20140610; t=1630012295; bh=Au4/XLuzSKcazW4K3qsm20msXis5fikK7zptZWqTcAI=; h=Content-Type:Date:From:Reply-To:Subject:To; b=Er2MchHHfukDNRy9JrKLjL+bmX558XVXgv3xOhTf5wg/iUtAc3DycshPG+1B8DyiVJ/ oSuuSXS+K8AFlXMfMSD72j145TjAH0HeYGfrwgLeYlG2T/T1NcGIkcxZk+vPsJfv0vEG5 kVYTYXiFkgyWXUlk9zxN/eYUvhpVSFjv1m0= Subject: [Hangout - NYLXS] [mothur] mothur v.1.46.0 release and other happenings X-BeenThere: hangout-at-nylxs.com X-Mailman-Version: 2.1.30rc1 List-Id: NYLXS Tech Talk and Politics List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: mothur-at-groups.io Content-Type: multipart/mixed; boundary="===============0288292963==" Errors-To: hangout-bounces-at-nylxs.com Sender: "Hangout" --===============0288292963== Content-Type: multipart/alternative; boundary="0000000000009bcb4305ca7ccfbb" --0000000000009bcb4305ca7ccfbb Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hello mothur users! We are happy to announce the release of mothur v.1.46.0 . Over the past few months we=E2=80=99ve incorporated a number of little tweaks to mothur to ma= ke it run better by resolving some bugs and improving the overall usability. We're particularly excited about two additions we've made that will hopefully help address some long standing problems people have had with analyzing ITS sequences and amino acid sequences. First, we have refactored pairwise.seqs to use a heuristic to reduce the number of distances that need to be calculated. The result is a >99% decrease in execution time. Second, we have added several new distance calculation methods to dist.seqs so that you can now calculate pairwise distances between amino acid sequences. Look for more functions in future releases for both ITS and amino acid sequences! Please let us know what you think of these functions and what other functionalities you'd like to see to make your ITS/amino acid sequence workflows easier. There's a couple of other items to let you know about to help you as you navigate your way through learning more about data analysis. First, my schedule for virtual workshops is up on the Riffomonas website with a mothur workshop scheduled for September. Second, I continue to post regular videos to the Riffomonas YouTube channel . Finally, if you're looking for more updates on Riffomonas and resources for strengthening your R skills, I have a free weekly newsletter that you can subscribe to. I've been encouraged by the positive feedback I've received from the content on Riffomonas - let me know if there's anything you'd like me to be sure to cover. Enjoy the new release and stay safe! Pat -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D- Groups.io Links: You receive all messages sent to this group. View/Reply Online (#35): https://groups.io/g/mothur/message/35 Mute This Topic: https://groups.io/mt/85172067/321522 Group Owner: mothur+owner-at-groups.io Unsubscribe: https://groups.io/g/mothur/leave/10134514/321522/2086763283/xy= zzy [ruben-at-mrbrklyn.com] -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D- --0000000000009bcb4305ca7ccfbb Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hello mothur users! We are happy to announce the re= lease of mothu= r v.1.46.0. Over the past few months we=E2=80=99ve incorporated a numbe= r of little tweaks to mothur to make it run better by resolving some bugs a= nd improving the overall usability. We're particularly excited about tw= o additions we've made that will hopefully help address some long stand= ing problems people have had with analyzing ITS sequences and amino acid se= quences. First, we have refactored se.seqs/">pairwise.seqs to use a heuristic to reduce the number of dist= ances that need to be calculated. The result is a >99% decrease in execu= tion time. Second, we have added several new distance calculation methods t= o dist.seqs so that you c= an now calculate pairwise distances between amino acid sequences. Look for = more functions in future releases for both ITS and amino acid sequences! Pl= ease let us know what you think of these functions and what other functiona= lities you'd like to see to make your ITS/amino acid sequence workflows= easier. There's a couple of other items to let you know about t= o help you as you navigate your way through learning more about data analys= is. First, my schedule for vi= rtual workshops is up on the Riffomonas website with a mothur workshop = scheduled for September. Second, I continue to post regular videos to the <= a href=3D"https://www.youtube.com/c/RiffomonasProject">Riffomonas YouTube c= hannel. Finally, if you're looking for more updates on Riffomonas a= nd resources for strengthening your R skills, I have a hop.riffomonas.org/email">free weekly newsletter that you can subscribe= to. I've been encouraged by the positive feedback I've received fr= om the content on Riffomonas - let me know if there's anything you'= d like me to be sure to cover. Enjoy the new release and stay safe!<= br>Pat _._,_._,_ G= roups.io Links: You receive all messages sent to this group. target=3D"_blank" href=3D"https://groups.io/g/mothur/message/35">View/Repl= y Online (#35) \| subject=3DRe:%20%5Bmothur%5D%20mothur%20v.1.46.0%20release%20and%20other%20= happenings">Reply To Group \| oss-at-umich.edu?subject=3DPrivate:%20Re:%20%5Bmothur%5D%20mothur%20v.1.46.0%2= 0release%20and%20other%20happenings">Reply To Sender \| _blank" href=3D"https://groups.io/mt/85172067/321522">Mute This Topic = \| New Topic =3D"https://groups.io/g/mothur/editsub/321522">Your Subscription \| ref=3D"mailto:mothur+owner-at-groups.io">Contact Group Owner \| "https://groups.io/g/mothur/leave/10134514/321522/2086763283/xyzzy">Unsubsc= ribe [ruben-at-mrbrklyn.com] ear:both">_._,_._,_ =20 --0000000000009bcb4305ca7ccfbb-- --===============0288292963== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Hangout mailing list Hangout-at-nylxs.com http://lists.mrbrklyn.com/mailman/listinfo/hangout --===============0288292963==-- --===============0288292963== Content-Type: multipart/alternative; boundary="0000000000009bcb4305ca7ccfbb" --0000000000009bcb4305ca7ccfbb Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hello mothur users! We are happy to announce the release of mothur v.1.46.0 . Over the past few months we=E2=80=99ve incorporated a number of little tweaks to mothur to ma= ke it run better by resolving some bugs and improving the overall usability. We're particularly excited about two additions we've made that will hopefully help address some long standing problems people have had with analyzing ITS sequences and amino acid sequences. First, we have refactored pairwise.seqs to use a heuristic to reduce the number of distances that need to be calculated. The result is a >99% decrease in execution time. Second, we have added several new distance calculation methods to dist.seqs so that you can now calculate pairwise distances between amino acid sequences. Look for more functions in future releases for both ITS and amino acid sequences! Please let us know what you think of these functions and what other functionalities you'd like to see to make your ITS/amino acid sequence workflows easier. There's a couple of other items to let you know about to help you as you navigate your way through learning more about data analysis. First, my schedule for virtual workshops is up on the Riffomonas website with a mothur workshop scheduled for September. Second, I continue to post regular videos to the Riffomonas YouTube channel . Finally, if you're looking for more updates on Riffomonas and resources for strengthening your R skills, I have a free weekly newsletter that you can subscribe to. I've been encouraged by the positive feedback I've received from the content on Riffomonas - let me know if there's anything you'd like me to be sure to cover. Enjoy the new release and stay safe! Pat -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D- Groups.io Links: You receive all messages sent to this group. View/Reply Online (#35): https://groups.io/g/mothur/message/35 Mute This Topic: https://groups.io/mt/85172067/321522 Group Owner: mothur+owner-at-groups.io Unsubscribe: https://groups.io/g/mothur/leave/10134514/321522/2086763283/xy= zzy [ruben-at-mrbrklyn.com] -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D- --0000000000009bcb4305ca7ccfbb Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hello mothur users! We are happy to announce the re= lease of mothu= r v.1.46.0. Over the past few months we=E2=80=99ve incorporated a numbe= r of little tweaks to mothur to make it run better by resolving some bugs a= nd improving the overall usability. We're particularly excited about tw= o additions we've made that will hopefully help address some long stand= ing problems people have had with analyzing ITS sequences and amino acid se= quences. First, we have refactored se.seqs/">pairwise.seqs to use a heuristic to reduce the number of dist= ances that need to be calculated. The result is a >99% decrease in execu= tion time. Second, we have added several new distance calculation methods t= o dist.seqs so that you c= an now calculate pairwise distances between amino acid sequences. Look for = more functions in future releases for both ITS and amino acid sequences! Pl= ease let us know what you think of these functions and what other functiona= lities you'd like to see to make your ITS/amino acid sequence workflows= easier. There's a couple of other items to let you know about t= o help you as you navigate your way through learning more about data analys= is. First, my schedule for vi= rtual workshops is up on the Riffomonas website with a mothur workshop = scheduled for September. Second, I continue to post regular videos to the <= a href=3D"https://www.youtube.com/c/RiffomonasProject">Riffomonas YouTube c= hannel. Finally, if you're looking for more updates on Riffomonas a= nd resources for strengthening your R skills, I have a hop.riffomonas.org/email">free weekly newsletter that you can subscribe= to. I've been encouraged by the positive feedback I've received fr= om the content on Riffomonas - let me know if there's anything you'= d like me to be sure to cover. Enjoy the new release and stay safe!<= br>Pat _._,_._,_ G= roups.io Links: You receive all messages sent to this group. target=3D"_blank" href=3D"https://groups.io/g/mothur/message/35">View/Repl= y Online (#35) \| subject=3DRe:%20%5Bmothur%5D%20mothur%20v.1.46.0%20release%20and%20other%20= happenings">Reply To Group \| oss-at-umich.edu?subject=3DPrivate:%20Re:%20%5Bmothur%5D%20mothur%20v.1.46.0%2= 0release%20and%20other%20happenings">Reply To Sender \| _blank" href=3D"https://groups.io/mt/85172067/321522">Mute This Topic = \| New Topic =3D"https://groups.io/g/mothur/editsub/321522">Your Subscription \| ref=3D"mailto:mothur+owner-at-groups.io">Contact Group Owner \| "https://groups.io/g/mothur/leave/10134514/321522/2086763283/xyzzy">Unsubsc= ribe [ruben-at-mrbrklyn.com] ear:both">_._,_._,_ =20 --0000000000009bcb4305ca7ccfbb-- --===============0288292963== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Hangout mailing list Hangout-at-nylxs.com http://lists.mrbrklyn.com/mailman/listinfo/hangout --===============0288292963==--