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DATE 2019-03-01

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MESSAGE
DATE 2019-03-12
FROM Ruben Safir
SUBJECT Subject: [Hangout - NYLXS] Fwd: [dinosaur] Course Using Geiger, Phytools,
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Subject: [dinosaur] Course Using Geiger, Phytools, and other
Computational Tools to Study Macroevolution on Phylogenies, 16-19 July,
Greece.
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Dear colleagues,

 

 

Registration is open for Transmitting Science course: “USING GEIGER,
PHYTOOLS, AND OTHER COMPUTATIONAL TOOLS TO STUDY MACROEVOLUTION ON
PHYLOGENIES”

 

Dates and place: July 16th-19th, 2019, Crete (Greece).

 

Instructors: Dr Liam Revell (University of Massachusetts Boston, USA)
and Dr Luke Harmon (University of Idaho, USA).

 

PROGRAM

 

Monday

 

- Introduction to phylogenies and the comparative method. [Lecture]

- Introduction the basics of the R statistical computing
environment. [Exercise]

- Introduction to reading, writing, manipulating, and visualizing
phylogenies and comparative data in R. [Exercise]

- Models of phenotypic trait evolution on trees: Brownian motion. [Lecture]

- Simulating Brownian motion on trees using R. [Exercise]

- Introduction to the phylogenetic comparative method: Phylogenetic
independent contrasts. [Lecture]

- Phylogenetic independent contrasts and exploring the properties of
contrasts regression using simulation in R. [Exercise]

- Phylogenetic generalized least squares regression and phylogenetic
generalized ANOVA. [Exercise]

 

 Tuesday

 

- Multivariate statistical methods with phylogenies: Phylogenetic
principal components analysis, canonical correlation analysis, and other
approaches. [Lecture]

- Phylogenetic PCA and phylogenetic CCA in R. [Exercise]

- Continuous character models of trait evolution on phylogenies. [Lecture]

- Fitting continuous character models to univariate trait data in
R. [Exercise]

-  Ancestral state reconstruction I: Continuous characters. [Lecture]

-  Reconstructing ancestral states for continuous traits on phylogenies
using R. [Exercise]

 

Wednesday

 

- Ancestral state reconstruction II: Discrete characters. [Lecture]

- Reconstructing ancestral states for discrete traits on phylogenies
using R. [Exercise]

- Exploring the limitations of ancestral state reconstruction for
continuous and discrete characters on phylogenies using R. [Exercise]

- Testing for the influence of one discrete character on a second using
Pagel’s (1994) method. [Lecture]

- Exploring the promise and limitations of the Pagel (1994) method using
R. [Exercise]

- Analysing discrete character coevolution, and the evolution of
discrete and continuous characters using the threshold model. [Lecture]

 

Thursday

 

- Fitting models of discrete and continuous character evolution on trees
using the threshold model. [Exercise]

- Multi-rate, multi-regime, and multivariate models of character
evolution on phylogenies. [Lecture]

- Fitting multi-regime and multivariate models for continuous character
evolution in - [Exercise]

- Visualizing trees and phylogenetic comparative data. [Lecture]

- Plotting phylogenies and comparative data using R. [Exercise]

- Wrap-up and optional additional exercise or lecture.

 

More information and registration
[https://urldefense.proofpoint.com/v2/url?u=https-3A__www.transmittingscience.org_courses_evolution_using-2Dgeiger-2Dphytools-2Dother-2Dcomputational-2Dtools-2Dstudy-2Dmacroevolution-2Dphylogenies_-5D-28https-3A__www.transmittingscience.org_courses_evolution_using-2Dgeiger-2Dphytools-2Dother-2Dcomputational-2Dtools-2Dstudy-2Dmacroevolution-2Dphylogenies_-29&d=DwIFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=Ry_mO4IFaUmGof_Yl9MyZgecRCKHn5g4z1CYJgFW9SI&m=-2y5rF2dUVJbUd5DKi_bnpdP1IZA6ScJC31Koh1bOWY&s=XEA_fxplrBRiSA37PNR-YFmhjX1VPixUuRJlrBoOKQs&e=

 

With best regards

 

Sole


Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)

Campus de la Universitat Autònoma de Barcelona

Cerdanyola del Vallès (Barcelona). Spain

www.icp.cat
  
 



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  1. 2019-03-01 From: "American Museum of Natural History" <learn-at-amnh.org> Subject: [Hangout - NYLXS] There are Still a Couple Weeks Left to Register
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  3. 2019-03-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] C++ and Linux $300,000
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  27. 2019-03-14 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Hendrix
  28. 2019-03-14 From: "IEEE Spectrum Tech Alert" <reply-at-media.ieee.org> Subject: [Hangout - NYLXS] =?utf-8?q?What_Programming_Languages_Engineers_?=
  29. 2019-03-14 From: "American Museum of Natural History" <learn-at-amnh.org> Subject: [Hangout - NYLXS] Take a Look at the Seminars on Science Spring
  30. 2019-03-16 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Just feel like sharing this
  31. 2019-03-16 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Meet the Press
  32. 2019-03-19 From: "Free Software Foundation" <info-at-fsf.org> Subject: [Hangout - NYLXS] RMS article: "Install fests: What to do about the
  33. 2019-03-18 From: "Free Software Foundation" <info-at-fsf.org> Subject: [Hangout - NYLXS] Your guide to LibrePlanet 2019, March 23-24!
  34. 2019-03-19 From: "School of Professional Studies" <bounces-at-liu.edu> Subject: [Hangout - NYLXS] Theodore Roosevelt Lectures Begin March 29
  35. 2019-03-18 GNOME Discourse <noreply-at-gnome.org> Subject: [Hangout - NYLXS] Neil McGovern (nmcgovern) invited you to join
  36. 2019-03-18 Gabor Szabo <gabor-at-szabgab.com> Subject: [Hangout - NYLXS] [Perlweekly] #399 - Some digging in history
  37. 2019-03-18 Gabor Szabo <gabor-at-szabgab.com> Subject: [Hangout - NYLXS] [Perlweekly] #399 - Some digging in history
  38. 2019-03-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Third most importamt issue to be under Trump
  39. 2019-03-22 From: "Free Software Foundation" <info-at-fsf.org> Subject: [Hangout - NYLXS] LibrePlanet starts tomorrow! Here's how you can
  40. 2019-03-21 From: "American Museum of Natural History" <learn-at-amnh.org> Subject: [Hangout - NYLXS] It's Never Too Early to Sign Up for a Summer
  41. 2019-03-21 From: "Rijksmuseum" <rijksstudio-at-e.rijksmuseum.nl> Subject: [Hangout - NYLXS] Springtime in Rijksstudio
  42. 2019-03-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Hangout - NYLXS] Movies Night - the Mick!
  43. 2019-03-26 From: "IEEE The Institute Alert" <reply-at-media.ieee.org> Subject: [Hangout - NYLXS] Rufus Chavez Shares His Experiences Working on
  44. 2019-03-24 IEEE Engineering in Medicine and Biology Society <noreply-at-embs.org> Subject: [Hangout - NYLXS] Reminder: EMBS News and Events
  45. 2019-03-25 From: "Pat Schloss" <pdschloss-at-gmail.com> Subject: [Hangout - NYLXS] [mothur] Upcoming R and mothur workshops
  46. 2019-03-25 Gabor Szabo <gabor-at-szabgab.com> Subject: [Hangout - NYLXS] [Perlweekly] #400 - 400th Edition of Perl Weekly
  47. 2019-03-28 Ruben Safir <ruben.safir-at-my.liu.edu> Subject: [Hangout - NYLXS] Fwd: Pay what you want for the Humble Book
  48. 2019-03-28 From: "American Museum of Natural History" <learn-at-amnh.org> Subject: [Hangout - NYLXS] Sign Up for a Summer Science Course Today!

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