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DATE 2016-11-01

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MESSAGE
DATE 2016-11-03
FROM Ruben Safir
SUBJECT Subject: [Learn] Fitch algorithm from the beginning
From learn-bounces-at-nylxs.com Thu Nov 3 01:31:15 2016
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From: Ruben Safir
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Subject: [Learn] Fitch algorithm from the beginning
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--------------99BD3CBD0A93DA0D41DD7528
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This is the start of the C++ structure

http://www.nylxs.com/docs/thesis/src/




--
So many immigrant groups have swept through our town
that Brooklyn, like Atlantis, reaches mythological
proportions in the mind of the world - RI Safir 1998
http://www.mrbrklyn.com

DRM is THEFT - We are the STAKEHOLDERS - RI Safir 2002
http://www.nylxs.com - Leadership Development in Free Software
http://www2.mrbrklyn.com/resources - Unpublished Archive
http://www.coinhangout.com - coins!
http://www.brooklyn-living.com

Being so tracked is for FARM ANIMALS and and extermination camps,
but incompatible with living as a free human being. -RI Safir 2013

--------------99BD3CBD0A93DA0D41DD7528
Content-Type: text/x-c++src;
name="nodes.cpp"
Content-Transfer-Encoding: 7bit
Content-Disposition: attachment;
filename="nodes.cpp"

#include "nodes.h"
#include
using namespace std;

template
NODE::~NODE{
}



--------------99BD3CBD0A93DA0D41DD7528
Content-Type: text/x-chdr;
name="nodes.h"
Content-Transfer-Encoding: 7bit
Content-Disposition: attachment;
filename="nodes.h"

#ifndef NODES_H
#define NODES_H
#include

using namespace std;

template
class NODE{
public:
NODE( unk value, NODE *a = 0, NODE *b = 0, NODE *p = 0 );
inline unk states();
inline void states(unk);
inline NODE * a();
inline NODE * b();
inline NODE * c();
// inline void next(NODE *);

~NODE();


private:
unk _states;
NODE *_a, _b, _p;
};

template
inline unk NODE::states(){ if(this != NULL) return _state; else return NULL; };

template
inline void NODE::states(unk s ){ _states = s ; };

class state{
public:
String num;
};

/* template
inline NODE::NODE(unk value, NODE *item): _value(value) {
if (!item){
//cout << "_value=> " << _value << endl;
_next = 0;
}
else{
//cout << "insert after _value=> " << _value << endl;
//_next = item->_next;
next(item->next());
item->next(this);

//inserts after on construction
}
};
*/


/*
template
inline unk NODE::value(){ if(this != NULL) return _value; else return NULL; };

template
inline void NODE::value(unk val){
_value = val;
};

*/

/*
template
inline NODE * NODE::next(){ if(this != NULL) return _next; else return NULL; };
*/

/*
template
inline void NODE::next(NODE * nxt){
//cout << "Adding Next \n";
_next = nxt;
}
*/

/*
template
class LIST{
public:
LIST() : _at_front(0), _at_end(0), _size(0) {}
inline int size();
inline void insert(NODE *, unk);
inline void insert(unk);
inline void front(unk);
inline void up_size();
inline void down_size();
void display(ostream &os = cout);
void remove_front();
void remove_all();
void remove_item(unk);
void remove_item(NODE *);
NODE * find(unk);
NODE * find_all(unk, NODE * last = NULL );

~LIST();

private:
NODE *_at_front;
NODE *_at_end;
int _size;
LIST(const LIST&);
LIST& operator=( const LIST&);
};
*/

/*
template
inline int LIST::size(){return _size;}
template
inline LIST::~LIST(){remove_all();}
template
inline void LIST::insert(NODE *ptr, unk value){
up_size();
//cout << "insert: ptr =>" << ptr << " value =>" << value << endl;
if(ptr == 0){
front(value);
return;
}
if(ptr == _at_end){
_at_end = new NODE(value,ptr);
return;
}
new NODE(value,ptr);
}
*/
/*
template
inline void LIST::insert(unk value){
up_size();
if(_at_end == 0){
front(value);
return;
}
NODE * new_item = new NODE(value, _at_end);
_at_end = new_item;
}

template
inline void LIST::up_size(){ ++_size; }

template
inline void LIST::down_size(){ --_size; }


template
inline void LIST::front(unk value){
NODE *tmp;
up_size();
if(_at_front){
tmp = _at_front;
_at_front = new NODE(value);
_at_front->next(tmp);
return;
}

_at_end = _at_front = new NODE(value);
return;
}

*/

/*
template
void LIST::display(ostream &os){
NODE * tmp = _at_front;

if (tmp == 0){
os << "No List" << endl;
return;
}


//unk i =0;
while(tmp != _at_end){
//cout << "Entering While Loop: "<< ++i << endl;
os << tmp->value() << ":";
tmp = tmp->next();
}

os << tmp->value() << endl;

}
*/

#endif

--------------99BD3CBD0A93DA0D41DD7528
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name="makefile"
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filename="makefile"

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_______________________________________________
Learn mailing list
Learn-at-nylxs.com
http://lists.mrbrklyn.com/mailman/listinfo/learn

--------------99BD3CBD0A93DA0D41DD7528--

  1. 2016-11-01 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] how is it indexing in cuda
  2. 2016-11-01 Ruben Safir <ruben.safir-at-my.liu.edu> Re: [Learn] not adequately speced of explained
  3. 2016-11-01 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] how is it indexing in cuda
  4. 2016-11-01 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] not adequately speced of explained
  5. 2016-11-02 Christopher League <league-at-contrapunctus.net> Re: [Learn] Fitch Algorithm - C++
  6. 2016-11-02 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fitch Algorithm - C++
  7. 2016-11-02 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] how is it indexing in cuda
  8. 2016-11-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fitch Algorithm - C++
  9. 2016-11-02 IEEE Computer Society <csconnection-at-computer.org> Subject: [Learn] Hear Google's John Martinis Take on Quantum Computing at
  10. 2016-11-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] opencl
  11. 2016-11-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] scheduled for tommorw
  12. 2016-11-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] threads tutorial
  13. 2016-11-03 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fitch Algorithm - C++
  14. 2016-11-03 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fitch Algorithm - C++
  15. 2016-11-03 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fitch Algorithm - C++
  16. 2016-11-03 Christopher League <league-at-contrapunctus.net> Re: [Learn] huffman code
  17. 2016-11-03 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] huffman code
  18. 2016-11-03 Ruben Safir <ruben.safir-at-my.liu.edu> Re: [Learn] huffman code
  19. 2016-11-03 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fitch algorithm from the beginning
  20. 2016-11-03 From: <mrbrklyn-at-panix.com> Subject: [Learn] huffman code
  21. 2016-11-03 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Phenology meeting
  22. 2016-11-03 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] relevant hackathon
  23. 2016-11-03 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] relevant hackathon
  24. 2016-11-04 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] huffman code
  25. 2016-11-04 Christopher League <league-at-contrapunctus.net> Subject: [Learn] Fitch/Sankoff
  26. 2016-11-05 Christopher League <league-at-contrapunctus.net> Re: [Learn] Fwd: templates within templates
  27. 2016-11-05 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Re: const T vs T const
  28. 2016-11-05 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Template Library files and Header linking troubles
  29. 2016-11-05 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: templates within templates
  30. 2016-11-06 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fwd: templates within templates
  31. 2016-11-06 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Fwd: templates within templates
  32. 2016-11-06 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fwd: templates within templates
  33. 2016-11-06 Christopher League <league-at-contrapunctus.net> Re: [Learn] Fwd: templates within templates
  34. 2016-11-06 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Fwd: templates within templates
  35. 2016-11-06 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Fwd: templates within templates
  36. 2016-11-06 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Fwd: templates within templates
  37. 2016-11-06 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] GNU Parallel 20161022 ('Matthew') released [stable]
  38. 2016-11-07 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] templates and ostream for future reference
  39. 2016-11-08 Christopher League <league-at-contrapunctus.net> Re: [Learn] C++ signature ambiguity
  40. 2016-11-08 Ruben Safir <ruben.safir-at-my.liu.edu> Re: [Learn] C++ signature ambiguity
  41. 2016-11-08 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] C++ signature ambiguity
  42. 2016-11-08 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Invitation: Phylogeny meeting -at- Weekly from 10:15 to
  43. 2016-11-08 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] Fwd: [nylug-talk] RSVP open: Wed Nov 16,
  44. 2016-11-09 Christopher League <league-at-contrapunctus.net> Re: [Learn] merge sort parallel hw
  45. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] merge sort parallel hw
  46. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] merge sort parallel hw
  47. 2016-11-09 Christopher League <league-at-contrapunctus.net> Re: [Learn] merge sort parallel hw
  48. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] mergesort tutorial
  49. 2016-11-09 Christopher League <league-at-contrapunctus.net> Re: [Learn] mergesort tutorial
  50. 2016-11-09 Christopher League <league-at-contrapunctus.net> Re: [Learn] namespace and external files confusion
  51. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] namespace and external files confusion
  52. 2016-11-09 From: "Carlos R. Mafra" <crmafra-at-gmail.com> Re: [Learn] Question about a small change
  53. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] =?utf-8?q?C++_call_of_overloaded_=E2=80=98track=28int*=26?=
  54. 2016-11-09 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: lost arguments
  55. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: [dinosaur] Dating origins of dinosaurs,
  56. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] merge sort parallel hw
  57. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] mergesort tutorial
  58. 2016-11-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] namespace and external files confusion
  59. 2016-11-10 Christopher League <league-at-contrapunctus.net> Re: [Learn] merge sort parallel hw
  60. 2016-11-10 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] merge sort parallel hw
  61. 2016-11-10 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] merge sort parallel hw
  62. 2016-11-10 Ruben Safir <ruben.safir-at-my.liu.edu> Re: [Learn] merge sort parallel hw
  63. 2016-11-10 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] [Hangout-NYLXS] mergesort tutorial
  64. 2016-11-10 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] Fwd: [Hangout-NYLXS] ease your mind- everything in the
  65. 2016-11-10 Ruben Safir <ruben.safir-at-my.liu.edu> Subject: [Learn] Fwd: [Hangout-NYLXS] R Programming Workshop
  66. 2016-11-10 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Paleocast phenogenetic tree building
  67. 2016-11-11 Christopher League <league-at-contrapunctus.net> Re: [Learn] merge sort parallel hw
  68. 2016-11-12 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] HW of mergesort in parallel
  69. 2016-11-13 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] merge sort in parallel assignment
  70. 2016-11-14 Christopher League <league-at-contrapunctus.net> Re: [Learn] merge sort in parallel assignment
  71. 2016-11-14 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] merge sort in parallel assignment
  72. 2016-11-14 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] merge sort parallel hw
  73. 2016-11-14 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] CUDA and video
  74. 2016-11-14 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] PNG Graphic formats and CRCs
  75. 2016-11-15 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: PNG coding
  76. 2016-11-15 ruben safir <ruben.safir-at-my.liu.edu> Subject: [Learn] Fwd: PNG Coding
  77. 2016-11-16 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Fwd: lost arguments
  78. 2016-11-16 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] relevant hackathon
  79. 2016-11-16 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] C++ Workshop Announcement
  80. 2016-11-16 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] Fwd: Re: ref use
  81. 2016-11-16 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] ref use
  82. 2016-11-16 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] why use a reference wrapper int his example
  83. 2016-11-17 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] [Hangout-NYLXS] at K&R now
  84. 2016-11-17 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: [Hangout-NYLXS] Fwd: PNG Coding
  85. 2016-11-18 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] C++ workshop and usenet responses
  86. 2016-11-19 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: ref use
  87. 2016-11-20 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] when is the constructor called for an object
  88. 2016-11-21 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: creating a binary tree
  89. 2016-11-21 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: hidden static
  90. 2016-11-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: ISBI 2017 Call for Abstracts and Non-Author
  91. 2016-11-21 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: PNG coding
  92. 2016-11-21 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Re: the new {} syntax
  93. 2016-11-21 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: when is the constructor called for an object
  94. 2016-11-21 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: when is the constructor called for an object
  95. 2016-11-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: [dinosaur] Eoconfuciusornis feather keratin and
  96. 2016-11-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] look what I found
  97. 2016-11-22 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Cuccuency book
  98. 2016-11-22 ruben safir <ruben.safir-at-my.liu.edu> Subject: [Learn] declare a func or call an object
  99. 2016-11-22 Ruben Safir <ruben.safir-at-my.liu.edu> Subject: [Learn] Fwd: Re: Using CLIPS as a library
  100. 2016-11-23 Ruben Safir <ruben.safir-at-my.liu.edu> Subject: [Learn] Fwd: Simple C++11 Wrapper for CLIPS 6.30
  101. 2016-11-23 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Parrelel Programming HW2 with maxpath
  102. 2016-11-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] great research news for big data
  103. 2016-11-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] mapping algorithms
  104. 2016-11-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Todays meeting
  105. 2016-11-25 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: [dinosaur] Flightless theropod phylogenetic variation
  106. 2016-11-26 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Note to self for Thursday
  107. 2016-11-26 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fitch etc
  108. 2016-11-26 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Note to self for Thursday
  109. 2016-11-26 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] operator<<() overloading details and friend
  110. 2016-11-27 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] 130 year old feathers analysis
  111. 2016-11-27 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: ACM/SPEC ICPE 2017 - Call for Tutorial Proposals
  112. 2016-11-27 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: ACM/SPEC ICPE 2017 - Call for Workshop Proposals
  113. 2016-11-27 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: CfP 22nd Conf. Reliable Software Technologies,
  114. 2016-11-27 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Seeking contributors for psyche-c
  115. 2016-11-29 Christopher League <league-at-contrapunctus.net> Re: [Learn] Look at this exciting output by my test program
  116. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Look at this exciting output by my test program
  117. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Look at this exciting output by my test program
  118. 2016-11-29 Christopher League <league-at-contrapunctus.net> Re: [Learn] Quantum Entanglement
  119. 2016-11-29 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Quantum Entanglement
  120. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Here is the paper I was talking out
  121. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Look at this exciting output by my test program
  122. 2016-11-29 nylxs <mrbrklyn-at-optonline.net> Subject: [Learn] Look at this exciting output by my test program
  123. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Quantum Entanglement
  124. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] The Death of PBS
  125. 2016-11-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] witmer lab ohio and 3d imaging
  126. 2016-11-30 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] phylogenetic crawler

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