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DATE 2016-10-01

LEARN

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MESSAGE
DATE 2016-10-04
FROM Ruben Safir
SUBJECT Subject: [Learn] another paper on this topic to dig through
From learn-bounces-at-nylxs.com Tue Oct 4 20:02:28 2016
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https://open.library.ubc.ca/cIRcle/collections/ubctheses/24/items/1.0073727

another paper on this topic to dig through

The Phylogeny and Evolution of Two
Ancient Lineages of Aquatic Plants
by
William James Donaldson Iles
B.Sc., The University of Toronto, 2005
A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF
THE REQUIREMENTS FOR THE DEGREE OF
DOCTOR OF PHILOSOPHY
in
The Faculty of Graduate Studies
(Botany)
THE UNIVERSITY OF BRITISH COLUMBIA
(Vancouver)
May 2013
c
William James Donaldson Iles 2013
Abstract
In my thesis I aim to improve our phylogenetic and evolutionary knowledge
of two ancient and distantly related groups of aquatic owering plants, Hy-
datellaceae and Alismatales. While the phylogeny of monocots has received
fairly intense scrutiny for two decades, some parts of its diversi cation have
been less frequently investigated. One such lineage is the order Alismatales,
which de nes one of the deepest splits in monocot evolution. Many fami-
lies of Alismatales are aquatic or semi-aquatic, and they have been impli-
cated in historical discussions of monocot origins. I evaluate inter-familial
relationships in the order, considering a suite of 17 plastid genes for 31 Al-
ismatales taxa for all 13 recognized families. This study improves on our
understanding of, and con dence in, higher-order Alismatales relationships.
I also uncovered convergent gene loss of plastid-encoded subunits for the
NADH dehydrogenase complex. I then expand monocot coverage outside
Alismatales by including unpublished and newly sequenced data for other
orders. This large-scale sample facilitated a re-evaluation of monocot phy-
logeny and molecular dating, the latter using 25 fossil constraints. Previ-
ously included in the monocot order Poales, Hydatellaceae are a small family
of ephemeral aquatics relatively recently found to be the sister group of wa-
ter lilies (Cabombaceae and Nymphaeaceae). I present the rst molecular
phylogeny of the family and evaluate aspects of the family's morphological
evolution. I show how sexual system shifts are associated with shifts in other
reproductive traits. I also infer a temporal scale for Hydatellaceae diversi -
cation using a two-step Bayesian approach. I use the resulting dated tree to
address biogeographic patterns and aspects of niche evolution. I show that
its \Gondwanan" distribution is the result of long-distance dispersal and
not continental rifting, and demonstrate strong phylogenetic niche conser-
ii
vatism in the family. These studies expand our understanding of evolution
in Hydatellaceae, and provide a substantial update to our understanding of
Alismatales (and more generally monocot) phylogeny and divergence times.

~~~~~~~~~~~~~~~~~~~~


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  1. 2016-10-04 ruben safir <ruben-at-mrbrklyn.com> Re: [Learn] Check List of Texts to learn Cladistics and
  2. 2016-10-04 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Library access
  3. 2016-10-04 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Library access
  4. 2016-10-04 Christopher League <christopher.league-at-liu.edu> Re: [Learn] phylogenetics
  5. 2016-10-04 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] 3rd scans and displays for msueums
  6. 2016-10-04 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] =?utf-8?q?Residual_diversity_estimates=E2=80=99_do_not_co?=
  7. 2016-10-04 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] another paper on this topic to dig through
  8. 2016-10-04 Ruben Safir <ruben.safir-at-my.liu.edu> Subject: [Learn] Basic Phylogeny and Systematics
  9. 2016-10-04 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Library access
  10. 2016-10-05 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] 3rd scans and displays for msueums
  11. 2016-10-05 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Re: Check List of Texts to learn Cladistics and
  12. 2016-10-06 From: "Ruben.Safir" <ruben.safir-at-my.liu.edu> Subject: [Learn] TNT - Boom
  13. 2016-10-06 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] tomorrow
  14. 2016-10-09 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: phylogeny tyrannosauroid dinosaurs
  15. 2016-10-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Re: phylogeny tyrannosauroid dinosaurs
  16. 2016-10-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Re: [dinosaur] phylogeny tyrannosauroid dinosaurs
  17. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Paleo meeting time
  18. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] phylogeny tyrannosauroid dinosaurs
  19. 2016-10-10 Steve Brusatte <brusatte-at-gmail.com> Re: [Learn] phylogeny tyrannosauroid dinosaurs
  20. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] phylogeny tyrannosauroid dinosaurs
  21. 2016-10-10 From: =?UTF-8?B?RGF2aWQgxIxlcm7DvQ==?= <david.cerny1-at-gmail.com> Re: [Learn] [dinosaur] phylogeny tyrannosauroid dinosaurs
  22. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] [dinosaur] phylogeny tyrannosauroid dinosaurs
  23. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] [dinosaur] phylogeny tyrannosauroid dinosaurs
  24. 2016-10-10 Dalton Meyer <paleonerd12-at-gmail.com> Re: [Learn] [dinosaur] phylogeny tyrannosauroid dinosaurs
  25. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] AI research
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  27. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: Re: [dinosaur] phylogeny tyrannosauroid dinosaurs
  28. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] http://palaeos.com/phylogeny/index.html
  29. 2016-10-10 Ruben Safir <ruben.safir-at-my.liu.edu> Subject: [Learn] maxillary fenestra and promaxillary fenestra
  30. 2016-10-10 Christopher League <league-at-contrapunctus.net> Subject: [Learn] Paleo meeting time
  31. 2016-10-10 Christopher League <league-at-contrapunctus.net> Subject: [Learn] Paleo meeting time
  32. 2016-10-10 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] promaxillary fenestra
  33. 2016-10-13 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Invitation: Phylogenetics project mtg -at- Thu 2016-10-13
  34. 2016-10-13 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Library access
  35. 2016-10-13 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: access to the screen
  36. 2016-10-13 ruben safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: access to the screen
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  49. 2016-10-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] publication
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  51. 2016-10-25 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Phylogenetics educational links
  52. 2016-10-27 Christopher League <league-at-contrapunctus.net> Re: [Learn] Phylogenetics educational links
  53. 2016-10-27 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Phylogenetics educational links
  54. 2016-10-27 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Phylogenetics educational links
  55. 2016-10-27 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] Phylogenetics educational links
  56. 2016-10-27 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] Phylogenetics educational links
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